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LOC4327311 uncharacterized LOC4327311 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4327311, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4327311
Gene description
uncharacterized LOC4327311
Locus tag
OSNPB_010193600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0001B06.4
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Genomic context

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See LOC4327311 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (5031856..5036577, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (5021046..5025715, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4327309 Neighboring gene F-box/LRR-repeat protein At4g29420 Neighboring gene protein ALWAYS EARLY 3 Neighboring gene uncharacterized LOC4327313 Neighboring gene protein IQ-DOMAIN 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4327311
Names
Os01g0193600
P0671B11.35
putative RNA methyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    5031856..5036577 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015770128.3 → XP_015625614.1  uncharacterized protein LOC4327311

    UniProtKB/TrEMBL
    A0A0P0UZC6, B9ETM0, Q0JPY2, Q9FEB7
    Conserved Domains (1) summary
    COG2265
    Location:60 → 550
    TrmA; tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family [Translation, ribosomal structure and biogenesis]

  2. XM_015770120.3 → XP_015625606.1  uncharacterized protein LOC4327311

    UniProtKB/TrEMBL
    A0A0P0UZC6, B9ETM0, Q0JPY2, Q9FEB7
    Conserved Domains (1) summary
    COG2265
    Location:60 → 550
    TrmA; tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family [Translation, ribosomal structure and biogenesis]
Nucleotide Protein
Heading Accession and Version

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