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LOC4326868 bidirectional sugar transporter SWEET2a-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4326868, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4326868
Gene description
bidirectional sugar transporter SWEET2a-like
Locus tag
OSNPB_010541800
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
SWEET2A; OsJ_02136; OsSWEET2a
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Genomic context

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See LOC4326868 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (20529057..20531346)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (19959672..19961954)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112939333 Neighboring gene uncharacterized LOC136354999 Neighboring gene uncharacterized LOC107279238 Neighboring gene protein kinase and PP2C-like domain-containing protein Neighboring gene DNA damage-repair/toleration protein DRT102

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sheath blight resistance in rice is negatively regulated by WRKY53 via SWEET2a activation. Gao Y, et al. Biochem Biophys Res Commun, 2021 Dec 31. PMID 34801931
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Sheath blight resistance in rice is negatively regulated by WRKY53 via SWEET2a activation.
    Title: Sheath blight resistance in rice is negatively regulated by WRKY53 via SWEET2a activation.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sugar transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bidirectional sugar transporter SWEET2a
Names
LOC_Os01g36070
OSJNBa0062A24.19
putative MtN3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001406288.1 → NP_001393217.1  bidirectional sugar transporter SWEET2a precursor

    Status: VALIDATED

    Source sequence(s)
    AK104143, CI320824, CI645229
    UniProtKB/Swiss-Prot
    A0A0P0V3P9, A2WR31, A2ZU53, Q5JJY5

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    20529057..20531346
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5JJY5.1 GenPept UniProtKB/Swiss-Prot:Q5JJY5

Gene LinkOut

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Molecular Biology Databases
Research Materials