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LOC4326847 uncharacterized LOC4326847 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4326847, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4326847
Gene description
uncharacterized LOC4326847
Locus tag
OSNPB_010337600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4326847 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
25
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (13290033..13305827, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (13246392..13262255, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene peptidyl-prolyl cis-trans isomerase-like 4 Neighboring gene pyrophosphate-energized vacuolar membrane proton pump Neighboring gene uncharacterized LOC4326848 Neighboring gene dihydrolipoyl dehydrogenase 1, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein phosphatase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of protein phosphatase 4 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4326847
Names
Os01g0337600
P0487E11.32-1
P0487E11.32-2
serine/threonine-protein phosphatase 4 regulatory subunit 3B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    13290033..13305827 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026025233.2 → XP_025881018.1  uncharacterized protein LOC4326847 isoform X3

    UniProtKB/TrEMBL
    Q0JN25, Q5Z8F2
    Conserved Domains (1) summary
    pfam04802
    Location:176 → 363
    SMK-1; Component of IIS longevity pathway SMK-1

  2. XM_015758270.3 → XP_015613756.1  uncharacterized protein LOC4326847 isoform X2

    UniProtKB/TrEMBL
    Q0JN25, Q5Z8F2
    Conserved Domains (1) summary
    pfam04802
    Location:181 → 368
    SMK-1; Component of IIS longevity pathway SMK-1

  3. XM_015758265.3 → XP_015613751.1  uncharacterized protein LOC4326847 isoform X1

    UniProtKB/TrEMBL
    Q0JN25, Q5Z8F2
    Conserved Domains (1) summary
    pfam04802
    Location:203 → 390
    SMK-1; Component of IIS longevity pathway SMK-1
Nucleotide Protein
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