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LOC4326684 kinesin-like protein KIN-13B [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4326684, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4326684
Gene description
kinesin-like protein KIN-13B
Locus tag
OSNPB_010625200
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
KIN13B; OsJ_02667
Expression
Biased expression in milk grains (RPKM 18.1), flowers (RPKM 16.2) and 3 other tissues See more
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Genomic context

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See LOC4326684 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (25537161..25541465)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (24958480..24962833)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene protein SGT1 homolog Neighboring gene WRKY transcription factor 22 Neighboring gene heat stress transcription factor C-1a-like Neighboring gene transcription repressor OFP1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables microtubule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables microtubule motor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in microtubule depolymerization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in microtubule-based movement IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in microtubule IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kinesin-like protein KIN-13B
Names
BY-2 kinesin-like protein 10-like
LOC_Os01g43580
P0006C01.10-1
P0006C01.10-2
kinesin heavy chain-like
kinesin-13A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001398288.1 → NP_001385217.1  kinesin-like protein KIN-13B

    Status: VALIDATED

    Source sequence(s)
    AK060383, AP014957, CI006125, CI523229, CI677309
    UniProtKB/Swiss-Prot
    A0A0P0V5H8, B9EY52
    UniProtKB/TrEMBL
    B8ABY9
    Conserved Domains (1) summary
    cd01367
    Location:152 → 475
    KISc_KIF2_like; Kinesin motor domain, KIF2-like group

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    25537161..25541465
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
B9EY52.2 GenPept UniProtKB/Swiss-Prot:B9EY52

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials