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LOC4326656 uncharacterized LOC4326656 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4326656, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4326656
Gene description
uncharacterized LOC4326656
Locus tag
OSNPB_010616900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4326656 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (25074223..25080330, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (24499182..24504876, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene zinc finger BED domain-containing protein RICESLEEPER 1-like Neighboring gene uncharacterized LOC4326655 Neighboring gene N-terminal acetyltransferase A complex auxiliary subunit NAA15 Neighboring gene protein ROOT PRIMORDIUM DEFECTIVE 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables CTP synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables identical protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in CTP biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pyrimidine nucleobase biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4326656
Names
CTP synthase
Os01g0616900
P0686E09.22
putative CTP synthetase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    25074223..25080330 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015765918.3 → XP_015621404.1  uncharacterized protein LOC4326656

    UniProtKB/TrEMBL
    Q5ZDK0
    Conserved Domains (1) summary
    PLN02327
    Location:1 → 557
    PLN02327; CTP synthase
Nucleotide Protein
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Research Materials