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LOC4326554 serine/threonine-protein kinase 52 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4326554, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4326554
Gene description
serine/threonine-protein kinase 52
Locus tag
OSNPB_010641000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4326554 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (26339233..26343639)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (25757778..25762213)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene CASP-like protein 4U1 Neighboring gene uncharacterized LOC4326553 Neighboring gene uncharacterized LOC4326555 Neighboring gene polyubiquitin 4-like Neighboring gene uncharacterized LOC4326558

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine/threonine-protein kinase 52
Names
Os01g0641000
P0039G05.14
protein kinase 6-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    26339233..26343639
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015767202.3 → XP_015622688.1  serine/threonine-protein kinase 52

    UniProtKB/TrEMBL
    A0A0P0V5S6, A2WT32, B9EYA2, Q8LQ53
    Conserved Domains (1) summary
    cd13999
    Location:90 → 358
    STKc_MAP3K-like; Catalytic domain of Mitogen-Activated Protein Kinase (MAPK) Kinase Kinase-like Serine/Threonine kinases
Nucleotide Protein
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