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LOC4326552 NADP-dependent malic enzyme [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4326552, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4326552
Gene description
NADP-dependent malic enzyme
Locus tag
OSNPB_010743500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Restricted expression toward mature seeds (RPKM 378.2) See more
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Genomic context

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See LOC4326552 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (31676251..31680949)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (31076561..31081303)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene probable glutamate carboxypeptidase LAMP1 Neighboring gene tryptophan--tRNA ligase, chloroplastic/mitochondrial Neighboring gene uncharacterized LOC4326165 Neighboring gene pseudo histidine-containing phosphotransfer protein 1 Neighboring gene kinesin-like protein KIN-14C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables malate dehydrogenase (decarboxylating) (NADP+) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in malate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pyruvate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
NADP-dependent malic enzyme
Names
Os01g0743500
P0439E07.33
cytosolic NADP malic enzyme

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    31676251..31680949
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015758567.3 → XP_015614053.1  NADP-dependent malic enzyme

    UniProtKB/TrEMBL
    A0A0N7KDQ8, A0A9K3Y818, A2ZXQ2, Q0JJE5, Q5JKW5, Q6SZS7
    Conserved Domains (1) summary
    PLN03129
    Location:17 → 585
    PLN03129; NADP-dependent malic enzyme; Provisional
Nucleotide Protein
Heading Accession and Version

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