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LOC4326513 S-formylglutathione hydrolase [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4326513, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4326513
Gene description
S-formylglutathione hydrolase
Locus tag
OSNPB_010939700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flower buds (RPKM 36.5), flowers (RPKM 28.4) and 6 other tissues See more
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Genomic context

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See LOC4326513 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (41901999..41922842)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (41251165..41272191)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene eukaryotic peptide chain release factor subunit 1-3 Neighboring gene probable glycerol-3-phosphate dehydrogenase [NAD(+)] 1, cytosolic Neighboring gene cytokinin dehydrogenase 4-like Neighboring gene hexokinase-3-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables S-formylglutathione hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in formaldehyde catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
S-formylglutathione hydrolase
Names
B1150F11.18-1
Os01g0939700
Os01g0939800
putative S-formylglutathione hydrolase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    41901999..41922842
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026022465.2 → XP_025878250.1  S-formylglutathione hydrolase isoform X2

    Conserved Domains (1) summary
    PLN02442
    Location:14 → 232
    PLN02442; S-formylglutathione hydrolase

  2. XM_015765823.3 → XP_015621309.1  S-formylglutathione hydrolase isoform X1

    UniProtKB/TrEMBL
    A0A0P0VCK9, Q5JLP6
    Conserved Domains (1) summary
    PLN02442
    Location:14 → 291
    PLN02442; S-formylglutathione hydrolase
Nucleotide Protein
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