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LOC4326394 zinc transporter 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4326394, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4326394
Gene description
zinc transporter 1-like
Locus tag
OSNPB_010972200
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
ZIP1; OsZIP1
Expression
Biased expression in roots before flowering (RPKM 5.5), flowers (RPKM 0.6) and 1 other tissue See more
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Genomic context

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See LOC4326394 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (43558219..43560115, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (42905545..42907489, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene pumilio homolog 1 Neighboring gene probable E3 ubiquitin-protein ligase RHC2A Neighboring gene Small polypeptide ROTUNDIFOLIA LIKE 3 Neighboring gene probable WRKY transcription factor 49

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables zinc ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in zinc ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc transporter 1
Names
LOC_Os01g74110
P0518C01.26
ZRT/IRT-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001397949.1 → NP_001384878.1  zinc transporter 1 precursor

    Status: VALIDATED

    Source sequence(s)
    AY302058
    UniProtKB/Swiss-Prot
    A0A0P0VDH4, Q7XZS7, Q94DG6
    Conserved Domains (1) summary
    pfam02535
    Location:60 → 349
    Zip; ZIP Zinc transporter

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    43558219..43560115 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q94DG6.1 GenPept UniProtKB/Swiss-Prot:Q94DG6

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials