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LOC4326374 serine/threonine-protein kinase AFC3 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4326374, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4326374
Gene description
serine/threonine-protein kinase AFC3
Locus tag
OSNPB_010590900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0710A02.4
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Genomic context

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See LOC4326374 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (23664951..23669468)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (23090744..23095284)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9267860 Neighboring gene uncharacterized LOC4326373 Neighboring gene aldehyde dehydrogenase family 2 member C4 Neighboring gene aldehyde dehydrogenase family 2 member C4 Neighboring gene uncharacterized LOC136352456

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine/threonine-protein kinase AFC3
Names
Os01g0590900
putative protein kinase PK12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    23664951..23669468
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015763468.3 → XP_015618954.1  serine/threonine-protein kinase AFC3

    UniProtKB/TrEMBL
    A0A0P0V4P4, A0A8J8YKA1, B8AB41, B9EXU0, Q5ZD29
    Conserved Domains (2) summary
    smart00220
    Location:59 → 384
    S_TKc; Serine/Threonine protein kinases, catalytic domain
    cd14134
    Location:46 → 384
    PKc_CLK; Catalytic domain of the Dual-specificity protein kinases, CDC-like kinases

RNA

  1. XR_001541924.3 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials