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LOC4326239 serine/threonine-protein kinase RUNKEL [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4326239, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4326239
Gene description
serine/threonine-protein kinase RUNKEL
Locus tag
OSNPB_010259400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0699D11.2
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Genomic context

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See LOC4326239 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (8703651..8711482, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (8691793..8699697, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene probable serine/threonine-protein kinase PBL7 Neighboring gene uncharacterized LOC9269653 Neighboring gene uncharacterized LOC4326240 Neighboring gene mediator-associated protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables microtubule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytokinesis by cell plate formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phragmoplast assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine/threonine-protein kinase RUNKEL
Names
Os01g0259400
P0462H08.34
putative FUSED serine/threonine kinase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    8703651..8711482 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015784847.3 → XP_015640333.1  serine/threonine-protein kinase RUNKEL

    UniProtKB/TrEMBL
    A0A0P0V132, B8AC52, Q5NAR7, Q5NAV7
    Conserved Domains (1) summary
    cd14010
    Location:3 → 257
    STKc_ULK4; Catalytic domain of the Serine/Threonine kinase, Unc-51-like kinase 4
Nucleotide Protein
Heading Accession and Version

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