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LOC4326027 respiratory burst oxidase homolog protein B-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4326027, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4326027
Gene description
respiratory burst oxidase homolog protein B-like
Locus tag
OSNPB_010360200
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
RBOHB; OsrbohB; OsJ_01746
Expression
Broad expression in leaves before flowering (RPKM 95.4), roots after flowering (RPKM 64.3) and 5 other tissues See more
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Genomic context

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See LOC4326027 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (14667234..14673667, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (14621295..14627952, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136351273 Neighboring gene putative disease resistance protein RGA4 Neighboring gene disease resistance protein RGA2 Neighboring gene uncharacterized LOC136356567 Neighboring gene dephospho-CoA kinase-like Neighboring gene uncharacterized LOC4326029

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. OsRbohB-mediated ROS production plays a crucial role in drought stress tolerance of rice. Shi Y, et al. Plant Cell Rep, 2020 Dec. PMID 32980968
  2. Focal Accumulation of ROS Can Block Pyricularia oryzae Effector BAS4-Expression and Prevent Infection in Rice. Chen Y, et al. Int J Mol Sci, 2020 Aug 27. PMID 32867341, Free PMC Article
  3. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  4. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. OsRbohB-mediated ROS production plays a crucial role in drought stress tolerance of rice.
    Title: OsRbohB-mediated ROS production plays a crucial role in drought stress tolerance of rice.
  2. Focal Accumulation of ROS Can Block Pyricularia oryzae Effector BAS4-Expression and Prevent Infection in Rice.
    Title: Focal Accumulation of ROS Can Block Pyricularia oryzae Effector BAS4-Expression and Prevent Infection in Rice.
Submit: New GeneRIF Correction

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NAD(P)H oxidase H2O2-forming activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables peroxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
respiratory burst oxidase homolog protein B
Names
B1164G11.26
LOC_Os01g25820
NADPH oxidase RBOHB
respiratory burst oxidase protein B
NP_001388500.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001401571.1 → NP_001388500.1  respiratory burst oxidase homolog protein B

    Status: VALIDATED

    Source sequence(s)
    AK065117, AU086063, CB683222, CF281044, D46291
    UniProtKB/Swiss-Prot
    A0A0P0V2T2, Q5ZAJ0, Q6J2K5

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    14667234..14673667 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5ZAJ0.1 GenPept UniProtKB/Swiss-Prot:Q5ZAJ0

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials