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LOC4325877 TOM1-like protein 9 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4325877, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4325877
Gene description
TOM1-like protein 9
Locus tag
OSNPB_010229200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0485D09.7
Expression
Ubiquitous expression in flower buds (RPKM 89.2), flowers (RPKM 56.9) and 6 other tissues See more
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Genomic context

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See LOC4325877 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (7140036..7148159)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (7129169..7137309)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene transcription factor MYB3R-1 Neighboring gene uncharacterized LOC4327193 Neighboring gene protein EMBRYONIC FLOWER 1 Neighboring gene rac-like GTP-binding protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TOM1-like protein 9
Names
Os01g0229200
P0452F10.31
target of Myb protein 1
target of myb1 -like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    7140036..7148159
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015757987.2 → XP_015613473.1  TOM1-like protein 9

    UniProtKB/TrEMBL
    A0A0N7KCL5, A2WMD4, Q0JPD0, Q5N7Y5
    Conserved Domains (4) summary
    TIGR01628
    Location:520 → 645
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    PHA03247
    Location:295 → 590
    PHA03247; large tegument protein UL36; Provisional
    cd14231
    Location:182 → 260
    GAT_GGA_like_plant; GAT domain found in uncharacterized Golgi-localized gamma ear-containing Arf-binding protein (GGA)-like proteins mainly found in plants
    cd03561
    Location:2 → 132
    VHS; VHS (Vps27/Hrs/STAM) domain family
Nucleotide Protein
Heading Accession and Version

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