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LOC4325687 delta(7)-sterol-C5(6)-desaturase [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4325687, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4325687
Gene description
delta(7)-sterol-C5(6)-desaturase
Locus tag
OSNPB_010134500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in flower buds (RPKM 24.0), flowers (RPKM 13.6) and 6 other tissues See more
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Genomic context

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See LOC4325687 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (1896176..1899911)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (1888468..1892260)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene probable leucine-rich repeat receptor-like protein kinase At1g68400 Neighboring gene uncharacterized LOC9268840 Neighboring gene protein SAR DEFICIENT 1 Neighboring gene endo-1,4-beta-xylanase 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables C-5 sterol desaturase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sterol biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta(7)-sterol-C5(6)-desaturase
Names
OSJNBa0083M16.29
Os01g0134500
putative sterol-C5(6)-desaturase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    1896176..1899911
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015765414.3 → XP_015620900.1  delta(7)-sterol-C5(6)-desaturase

    UniProtKB/TrEMBL
    A0A8J8Y1W9, A2WKC6, A2ZNY8, Q0JQX0, Q5ZCK9
    Conserved Domains (1) summary
    pfam04116
    Location:133 → 263
    FA_hydroxylase; Fatty acid hydroxylase superfamily
Nucleotide Protein
Heading Accession and Version

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