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LOC4325456 protein NRT1/ PTR FAMILY 8.2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4325456, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4325456
Gene description
protein NRT1/ PTR FAMILY 8.2
Locus tag
OSNPB_010142600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in leaves after flowering (RPKM 44.3), leaves before flowering (RPKM 38.2) and 6 other tissues See more
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Genomic context

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See LOC4325456 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (2300062..2306048)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (2292093..2298290)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene transfer RNA aspartic acid (anticodon GUC) Neighboring gene transcription factor DIVARICATA Neighboring gene uncharacterized LOC136354987 Neighboring gene uncharacterized LOC112937828

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in oligopeptide transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein NRT1/ PTR FAMILY 8.2; uncharacterized protein LOC4325456
Names
Os01g0142600
Os01g0142800
P0019D06.17-1
P0024G09.5-1
putative peptide transport protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    2300062..2306048
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015762794.3 → XP_015618280.1  uncharacterized protein LOC4325456 isoform X1

    UniProtKB/TrEMBL
    A0A0P0UYD6
    Conserved Domains (1) summary
    cl21472
    Location:24 → 96
    MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...

  2. XM_015762812.3 → XP_015618298.1  protein NRT1/ PTR FAMILY 8.2 isoform X2

    UniProtKB/TrEMBL
    A2WKJ2, A2ZP47, B7EH87, Q7F492, Q9FU86
    Conserved Domains (1) summary
    cl28910
    Location:30 → 562
    MFS; Major Facilitator Superfamily

  3. XM_015762786.3 → XP_015618272.1  uncharacterized protein LOC4325456 isoform X1

    UniProtKB/TrEMBL
    A0A0P0UYD6
    Conserved Domains (1) summary
    cl21472
    Location:24 → 96
    MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...

  4. XM_015762803.3 → XP_015618289.1  protein NRT1/ PTR FAMILY 8.2 isoform X2

    UniProtKB/TrEMBL
    A2WKJ2, A2ZP47, B7EH87, Q7F492, Q9FU86
    Conserved Domains (1) summary
    cl28910
    Location:30 → 562
    MFS; Major Facilitator Superfamily
Nucleotide Protein
Heading Accession and Version

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