U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4325448 probable sucrose-phosphatase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4325448, updated on 10-Oct-2024

Summary

Go to the top of the page Help
Gene symbol
LOC4325448
Gene description
probable sucrose-phosphatase 1
Locus tag
OSNPB_010376700
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
SPP1; OsSPP1; OsJ_01840; OsJ_001789
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC4325448 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (15632059..15636638, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (15568776..15573393, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9269634 Neighboring gene uncharacterized LOC107278589 Neighboring gene glutathione S-transferase T3-like Neighboring gene desmethyl-deoxy-podophyllotoxin synthase Neighboring gene small nucleolar RNA R71

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

Go to the top of the page

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sucrose-phosphate phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sucrose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
sucrose-phosphate phosphatase 1
Names
B1111C09.29
LOC_Os01g27880
sucrose-phosphatase-like protein
NP_001388763.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001401834.1 → NP_001388763.1  sucrose-phosphate phosphatase 1

    Status: VALIDATED

    Source sequence(s)
    AK071525, CI259986, CI586543
    UniProtKB/Swiss-Prot
    A0A0N7KCZ7, A2ZTB7, B7EJJ4, Q0JMN3, Q94E75

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    15632059..15636638 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q94E75.1 GenPept UniProtKB/Swiss-Prot:Q94E75

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.