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LOC4325065 large ribosomal subunit protein uL1-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4325065, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4325065
Gene description
large ribosomal subunit protein uL1-like
Locus tag
OSNPB_010860300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flower buds (RPKM 50.6), flowers (RPKM 34.6) and 6 other tissues See more
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Genomic context

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See LOC4325065 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (37858470..37861609)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (37231559..37234652)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene F-box/LRR-repeat protein At1g67190 Neighboring gene uncharacterized LOC136355504 Neighboring gene acidic endochitinase Neighboring gene hevamine-A Neighboring gene ferredoxin, root R-B1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maturation of LSU-rRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic large ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
large ribosomal subunit protein uL1-like
Names
Os01g0860300
P0489B03.28
P0679C12.18
putative 60S ribosomal protein L10A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    37858470..37861609
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015795362.2 → XP_015650848.1  large ribosomal subunit protein uL1-like

    UniProtKB/TrEMBL
    A2WX71, B7F9R7, Q5N7C5, Q8LR24
    Conserved Domains (1) summary
    PTZ00029
    Location:1 → 216
    PTZ00029; 60S ribosomal protein L10a; Provisional
Nucleotide Protein
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