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LOC4325046 sterol 3-beta-glucosyltransferase UGT80B1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4325046, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4325046
Gene description
sterol 3-beta-glucosyltransferase UGT80B1
Locus tag
OSNPB_010867600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0677H08.6
Expression
Ubiquitous expression in roots before flowering (RPKM 12.0), milk grains (RPKM 7.6) and 6 other tissues See more
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Genomic context

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See LOC4325046 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (38193770..38203711)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (37566033..37575965)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4325077 Neighboring gene bZIP transcription factor 12-like Neighboring gene protein YIP4b Neighboring gene polypyrimidine tract-binding protein homolog 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sterol 3-beta-glucosyltransferase UGT80B1
Names
Os01g0867600
putative UDP-glucose:sterol glucosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    38193770..38203711
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015766956.3 → XP_015622442.1  sterol 3-beta-glucosyltransferase UGT80B1

    UniProtKB/TrEMBL
    A0A0P0VAV2, Q0JHF0, Q5N968
    Conserved Domains (1) summary
    cd03784
    Location:167 → 582
    GT1_Gtf-like; UDP-glycosyltransferases and similar proteins
Nucleotide Protein
Heading Accession and Version

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