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LOC4324899 probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4324899, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4324899
Gene description
probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial
Locus tag
OSNPB_010888500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4324899 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (39249051..39255394, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (38618736..38625082, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136355506 Neighboring gene NAC domain-containing protein 35 Neighboring gene MLO-like protein 1 Neighboring gene serine/threonine-protein kinase rio2 Neighboring gene protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphoribosylformylglycinamidine synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in 'de novo' IMP biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial
Names
B1099D03.28
Os01g0888500
P0434C04.48
putative formylglycineamide ribotide amidotransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    39249051..39255394 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015762141.3 → XP_015617627.1  probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial

    UniProtKB/TrEMBL
    A2WXS1, Q5N821, Q5N8R3
    Conserved Domains (4) summary
    cd02203
    Location:313 → 697
    PurL_repeat1; PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), first repeat. FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, ...
    cd02204
    Location:798 → 1071
    PurL_repeat2; PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), second repeat. FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, ...
    PLN03206
    Location:110 → 1418
    PLN03206; phosphoribosylformylglycinamidine synthase; Provisional
    pfam13507
    Location:1149 → 1418
    GATase_5; CobB/CobQ-like glutamine amidotransferase domain
Nucleotide Protein
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