U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4324841 UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4324841, updated on 13-Jul-2024

Summary

Go to the top of the page Help
Gene symbol
LOC4324841
Gene description
UDP-glucuronate:xylan alpha-glucuronosyltransferase 1
Locus tag
OSNPB_010880200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
GUX1
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC4324841 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (38827115..38832635)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (38197001..38202539)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol 4-kinase gamma 4 Neighboring gene uncharacterized LOC9267054 Neighboring gene probable pectinesterase/pectinesterase inhibitor 51 Neighboring gene protein trichome berefringence-like 7

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Biochemical Characterization of Rice Xylan Biosynthetic Enzymes in Determining Xylan Chain Elongation and Substitutions. Zhong R, et al. Plant Cell Physiol, 2024 Jun 27. PMID 38501734
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in xylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
UDP-glucuronate:xylan alpha-glucuronosyltransferase 1
Names
Os01g0880200
P0018C10.44-1
glycogenin-like protein
xylan glucuronyltransferase 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    38827115..38832635
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015765446.3 → XP_015620932.1  UDP-glucuronate:xylan alpha-glucuronosyltransferase 1

    UniProtKB/TrEMBL
    A0A0N7KE64, B8A7E1, Q5NA53
    Conserved Domains (1) summary
    cd02537
    Location:306 → 551
    GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials