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LOC4324733 probable galacturonosyltransferase 15 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4324733, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4324733
Gene description
probable galacturonosyltransferase 15
Locus tag
OSNPB_010727100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4324733 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (30908800..30913016)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (30311226..30315793)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene MADS-box transcription factor 32-like Neighboring gene uncharacterized LOC4324732 Neighboring gene probable complex I intermediate-associated protein 30 Neighboring gene protein S40-1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable galacturonosyltransferase 15
Names
Os01g0727100
P0042A10.33
glycosyl transferase family 8 protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    30908800..30913016
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015777165.3 → XP_015632651.1  probable galacturonosyltransferase 15

    UniProtKB/TrEMBL
    A0A0P0V7P8, B8A8Z6, Q5JM51
    Conserved Domains (1) summary
    PLN02867
    Location:1 → 532
    PLN02867; Probable galacturonosyltransferase
Nucleotide Protein
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