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LOC4324717 NADP-dependent malic enzyme [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4324717, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4324717
Gene description
NADP-dependent malic enzyme
Locus tag
OSNPB_010723400
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
NADP-ME2
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Genomic context

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See LOC4324717 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (30762978..30768618)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (30166022..30171653)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene senescence/dehydration-associated protein At4g35985, chloroplastic Neighboring gene small ribosomal subunit protein eS24z Neighboring gene B3 domain-containing protein Os01g0723500 Neighboring gene ribose-phosphate pyrophosphokinase 3, chloroplastic-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables malate dehydrogenase (decarboxylating) (NADP+) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in malate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pyruvate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
NADP-dependent malic enzyme
Names
Os01g0723400
P0022F10.15-1
P0022F10.15-2
putative NADP-dependent malic protein
NP_001411177.1
NP_001411769.1
XP_015620425.1
XP_066165121.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001424248.1 → NP_001411177.1  NADP-dependent malic enzyme isoform 1

    Status: VALIDATED

    Source sequence(s)
    AB053295, CA998306, CB662267, CB667271, CF307959
    UniProtKB/TrEMBL
    B8A8R6, B9EZH0

  2. NM_001424840.1 → NP_001411769.1  NADP-dependent malic enzyme isoform 2

    Status: VALIDATED

    Source sequence(s)
    AK099646
    UniProtKB/TrEMBL
    B7EPE0, Q5JNA0

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    30762978..30768618
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066309024.1 → XP_066165121.1  NADP-dependent malic enzyme isoform X2

    UniProtKB/TrEMBL
    B8A8R6, B9EZH0

  2. XM_015764939.2 → XP_015620425.1  NADP-dependent malic enzyme isoform X1

    UniProtKB/TrEMBL
    Q9FRT2
    Conserved Domains (1) summary
    PLN03129
    Location:61 → 642
    PLN03129; NADP-dependent malic enzyme; Provisional
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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