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LOC4324587 ABC transporter D family member 2, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4324587, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4324587
Gene description
ABC transporter D family member 2, chloroplastic
Locus tag
OSNPB_010218700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in leaves before flowering (RPKM 34.6), roots after flowering (RPKM 19.8) and 6 other tissues See more
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Genomic context

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See LOC4324587 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (6510449..6516897, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (6500706..6507231, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136354911 Neighboring gene protein FLOWERING LOCUS T 1 Neighboring gene histone-lysine N-methyltransferase ATX5 Neighboring gene histone-lysine N-methyltransferase ATX3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ABC-type transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ABC transporter D family member 2, chloroplastic
Names
Os01g0218700
P0489G09.13
P0665D10.28
putative ABC transporter Nda

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    6510449..6516897 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015756375.3 → XP_015611861.1  ABC transporter D family member 2, chloroplastic isoform X1

    UniProtKB/TrEMBL
    B8AAK9, Q0JPK1, Q5NAU5, Q5QNE1
    Conserved Domains (1) summary
    COG4178
    Location:110 → 740
    YddA; ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

  2. XM_015756382.3 → XP_015611868.1  ABC transporter D family member 2, chloroplastic isoform X2

    Conserved Domains (3) summary
    TIGR02673
    Location:321 → 568
    FtsE; cell division ATP-binding protein FtsE
    cd03223
    Location:322 → 585
    ABCD_peroxisomal_ALDP; ATP-binding cassette domain of peroxisomal transporter, subfamily D
    cl00549
    Location:8 → 229
    ABC_membrane; ABC transporter transmembrane region
Nucleotide Protein
Heading Accession and Version

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