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LOC4324413 DEAD-box ATP-dependent RNA helicase 18-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4324413, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4324413
Gene description
DEAD-box ATP-dependent RNA helicase 18-like
Locus tag
OSNPB_010164500
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
bip115; OsJ_00495; P0701D05.2
Expression
Ubiquitous expression in flower buds (RPKM 13.0), flowers (RPKM 9.5) and 6 other tissues See more
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Genomic context

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See LOC4324413 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (3337207..3340628, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (3328513..3332015, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene non-classical arabinogalactan protein 31 Neighboring gene transcription initiation factor TFIID subunit 15b Neighboring gene probable protein phosphatase 2C 1 Neighboring gene protein GET4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dEAD-box ATP-dependent RNA helicase 18
Names
B1189A09.47
BRI1-KD-interacting protein 115
DEAD-box ATP-dependent RNA helicase 18
LOC_Os01g07080
putative RNA helicase
NP_001393042.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001406113.1 → NP_001393042.1  dEAD-box ATP-dependent RNA helicase 18

    Status: VALIDATED

    Source sequence(s)
    AK068747, CI089401
    UniProtKB/Swiss-Prot
    B7EFB7, Q761Z9, Q942Q0
    UniProtKB/TrEMBL
    B8ADF1

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    3337207..3340628 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q761Z9.2 GenPept UniProtKB/Swiss-Prot:Q761Z9

Gene LinkOut

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Molecular Biology Databases
Research Materials