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LOC4324276 probable aquaporin TIP4-3 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4324276, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4324276
Gene description
probable aquaporin TIP4-3
Locus tag
OSNPB_010232000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
TIP4-3
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Genomic context

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See LOC4324276 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (7308620..7309793)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (7297647..7298885)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4325893 Neighboring gene uncharacterized LOC4325894 Neighboring gene probable aquaporin TIP4-2 Neighboring gene protein JINGUBANG

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables water channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in water transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable aquaporin TIP4-3
Names
LOC_Os01g13120
P0431F01.24
Tonoplast intrinsic protein 4-3
putative tonoplast membrane integral protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    7308620..7309793
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015765952.3 → XP_015621438.1  probable aquaporin TIP4-3

    UniProtKB/Swiss-Prot
    A0A0P0V009, Q0JPB4, Q9LWR2
    UniProtKB/TrEMBL
    A2WMF5
    Conserved Domains (1) summary
    cl00200
    Location:3 → 248
    MIP; Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LWR2.1 GenPept UniProtKB/Swiss-Prot:Q9LWR2

Gene LinkOut

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Molecular Biology Databases
Research Materials