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LOC4324261 histidine biosynthesis bifunctional protein hisIE, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4324261, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4324261
Gene description
histidine biosynthesis bifunctional protein hisIE, chloroplastic
Locus tag
OSNPB_010276500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in mature seeds (RPKM 16.5), flowers (RPKM 16.0) and 6 other tissues See more
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Genomic context

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See LOC4324261 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (9697892..9702566, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (9684835..9689522, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene late embryogenesis abundant protein ECP63 Neighboring gene presenilin-like protein At1g08700 Neighboring gene E3 ubiquitin-protein ligase SIRP1-like Neighboring gene pyruvate kinase, cytosolic isozyme

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphoribosyl-AMP cyclohydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphoribosyl-ATP diphosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-histidine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histidine biosynthesis bifunctional protein hisIE, chloroplastic
Names
Os01g0276500
P0038F12.23
putative phosphoribosyl-ATP pyrophosphohydrolase At-IE

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    9697892..9702566 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015755720.3 → XP_015611206.1  histidine biosynthesis bifunctional protein hisIE, chloroplastic

    UniProtKB/TrEMBL
    A0A0P0V151, A0A8J8XTG4, A2WNF2, Q0JNN5, Q5NBQ1
    Conserved Domains (1) summary
    PLN02346
    Location:38 → 306
    PLN02346; histidine biosynthesis bifunctional protein hisIE

RNA

  1. XR_003241808.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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