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LOC4324176 cytosolic isocitrate dehydrogenase [NADP] [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4324176, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4324176
Gene description
cytosolic isocitrate dehydrogenase [NADP]
Locus tag
OSNPB_010654500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in leaves before flowering (RPKM 720.5), leaves after flowering (RPKM 424.0) and 6 other tissues See more
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Genomic context

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See LOC4324176 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (27115276..27119299, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (26533099..26537150, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene membrane-bound transcription factor site-2 protease homolog Neighboring gene actin-related protein 2/3 complex subunit 2A Neighboring gene uncharacterized LOC4324175 Neighboring gene uncharacterized LOC136356093 Neighboring gene uncharacterized LOC112937876

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables isocitrate dehydrogenase (NADP+) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in NADP metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in isocitrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytosolic isocitrate dehydrogenase [NADP]
Names
NADP-specific isocitrate dehydrogenase
OSJNBa0049H05.1
OSJNBb0006H05.32
Os01g0654500
putative NADP-specific isocitrate dehydrogenase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    27115276..27119299 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015756921.3 → XP_015612407.1  cytosolic isocitrate dehydrogenase [NADP]

    UniProtKB/TrEMBL
    A0A8J8XY43, A2WTC5, A2Y7Q3, A2ZW43, Q0JKR5, Q7F280, Q9XGU8
    Conserved Domains (1) summary
    PLN00103
    Location:1 → 409
    PLN00103; isocitrate dehydrogenase (NADP+); Provisional
Nucleotide Protein
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