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LOC4324118 uncharacterized LOC4324118 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4324118, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4324118
Gene description
uncharacterized LOC4324118
Locus tag
OSNPB_010687500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4324118 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (28952102..28956059)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (28363991..28367989)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4324116 Neighboring gene acidic endochitinase Neighboring gene uncharacterized LOC4324119 Neighboring gene uncharacterized LOC4327935 Neighboring gene L-gulonolactone oxidase 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables methionyl-tRNA formyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in conversion of methionyl-tRNA to N-formyl-methionyl-tRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4324118
Names
Met-tRNAi formyl transferase-like
Os01g0687500
P0519D04.22
methionyl-tRNA formyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    28952102..28956059
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015766892.3 → XP_015622378.1  uncharacterized protein LOC4324118

    UniProtKB/TrEMBL
    A0A0P0V6V5, B8A7N8, B9EYP2, Q5N7L5
    Conserved Domains (3) summary
    cd08646
    Location:33 → 247
    FMT_core_Met-tRNA-FMT_N; Methionyl-tRNA formyltransferase, N-terminal hydrolase domain
    PLN02285
    Location:32 → 358
    PLN02285; methionyl-tRNA formyltransferase
    pfam02911
    Location:250 → 352
    Formyl_trans_C; Formyl transferase, C-terminal domain

RNA

  1. XR_001542692.3 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials