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LOC4323899 acidic endochitinase SE2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4323899, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4323899
Gene description
acidic endochitinase SE2
Locus tag
OSNPB_010303100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4323899 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (11235063..11236280)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (11208195..11209819)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107280832 Neighboring gene calvin cycle protein CP12-1, chloroplastic Neighboring gene uncharacterized LOC4323900 Neighboring gene outer envelope pore protein 16-2, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acidic endochitinase SE2
Names
B1146F03.32
Os01g0303100
P0035H10.19
putative class III chitinase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    11235063..11236280
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015789371.3 → XP_015644857.1  acidic endochitinase SE2

    UniProtKB/TrEMBL
    A0A0P0V1L6, A0A9K3Y777, Q0JND3, Q657I8, Q9FP24
    Conserved Domains (1) summary
    cd02877
    Location:51 → 333
    GH18_hevamine_XipI_class_III; This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that ...
Nucleotide Protein
Heading Accession and Version

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