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ift70a.S intraflagellar transport 70a S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 432240, updated on 4-Nov-2024

Summary

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Official Symbol
ift70a.S
Official Full Name
intraflagellar transport 70a S homeolog
Primary source
Xenbase:XB-GENE-1221165
Locus tag
XELAEV_18033194mg
See related
EnsemblRapid:ENSXLAG00005021336 AllianceGenome:Xenbase:XB-GENE-1221165
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
fleer; ttc30; FAP259; ift70a; ttc30a; CFAP259; ttc30a.S
Summary
Predicted to enable intraciliary transport particle B binding activity. Predicted to act upstream of or within intraciliary transport and protein polyglutamylation. Predicted to be located in axonemal microtubule. Predicted to be part of intraciliary transport particle B. Is expressed in dermal system and nervous system. Orthologous to human IFT70A (intraflagellar transport 70A). [provided by Alliance of Genome Resources, Nov 2024]
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See ift70a.S in Genome Data Viewer
Location:
chromosome: 6S
Exon count:
19
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6S NC_054382.1 (45796258..45826430, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6S NC_030735.1 (44523259..44553463, complement)

Chromosome 6S - NC_054382.1Genomic Context describing neighboring genes Neighboring gene beaded filament structural protein 2 S homeolog Neighboring gene transmembrane protein 108 S homeolog Neighboring gene ubiquitin like modifier activating enzyme 5 S homeolog Neighboring gene kinesin family member 15 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC80272

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables intraciliary transport particle B binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cell projection organization IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within intraciliary transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within intraciliary transport ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within protein polyglutamylation ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in axonemal microtubule IEA
Inferred from Electronic Annotation
more info
  
located_in axonemal microtubule ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in cilium IEA
Inferred from Electronic Annotation
more info
  
located_in cilium ISS
Inferred from Sequence or Structural Similarity
more info
  
part_of intraciliary transport particle B IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
intraflagellar transport protein 70A
Names
TPR repeat protein 30
TPR repeat protein 30A
tetratricopeptide repeat domain 30
tetratricopeptide repeat domain 30a S homeolog
tetratricopeptide repeat protein 30
tetratricopeptide repeat protein 30A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001091689.1 → NP_001085158.1  intraflagellar transport protein 70A

    See identical proteins and their annotated locations for NP_001085158.1

    Status: PROVISIONAL

    Source sequence(s)
    BC072174
    UniProtKB/Swiss-Prot
    Q6INU8
    UniProtKB/TrEMBL
    A0A974HE74
    Related
    ENSXLAP00005063006.1, ENSXLAT00005064459.1
    Conserved Domains (2) summary
    sd00006
    Location:41 → 71
    TPR; TPR repeat [structural motif]
    pfam13414
    Location:139 → 202
    TPR_11; TPR repeat

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054382.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    45796258..45826430 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6INU8.1 GenPept UniProtKB/Swiss-Prot:Q6INU8

Gene LinkOut

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