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ocm4.4.S oncomodulin 4 gene 4 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 432236, updated on 4-Nov-2024

Summary

Official Symbol
ocm4.4.S
Official Full Name
oncomodulin 4 gene 4 S homeolog
Primary source
Xenbase:XB-GENE-5937256
Locus tag
XELAEV_18047609mg
See related
AllianceGenome:Xenbase:XB-GENE-5937256
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
LOC548651.S
Summary
Predicted to enable calcium ion binding activity. Predicted to be located in cytoplasm. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

See ocm4.4.S in Genome Data Viewer
Location:
chromosome: 9_10S
Exon count:
4
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10S NC_054388.1 (96536303..96540664)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10S NC_030741.1 (89889104..89893938)

Chromosome 9_10S - NC_054388.1Genomic Context describing neighboring genes Neighboring gene oncomodulin 4 gene 1 S homeolog Neighboring gene oncomodulin 4 gene 2 S homeolog Neighboring gene oncomodulin 4 gene 3 S homeolog Neighboring gene oncomodulin 4 gene 5 S homeolog Neighboring gene oncomodulin 4 gene 6 S homeolog

Genomic regions, transcripts, and products

General gene information

Clone Names

  • MGC80184

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
Parvalbumin beta-like; uncharacterized protein LOC432236
Names
parvalbumin S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001091685.1NP_001085154.1  Parvalbumin beta-like

    See identical proteins and their annotated locations for NP_001085154.1

    Status: PROVISIONAL

    Source sequence(s)
    BC072161
    UniProtKB/TrEMBL
    Q6INW1
    Conserved Domains (2) summary
    cd00051
    Location:43101
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    pfam13499
    Location:44101
    EF-hand_7; EF-hand domain pair

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054388.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    96536303..96540664
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018237422.2XP_018092911.1  uncharacterized protein LOC432236 isoform X1

    UniProtKB/TrEMBL
    Q6INW1
  2. XM_018237423.2XP_018092912.1  uncharacterized protein LOC432236 isoform X2

    UniProtKB/TrEMBL
    A0A1L8EQI3, A0A974BVQ1