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lrp2bp.S LRP2 binding protein S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 432223, updated on 17-Aug-2024

Summary

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Official Symbol
lrp2bp.S
Official Full Name
LRP2 binding protein S homeolog
Primary source
Xenbase:XB-GENE-6078212
Locus tag
XELAEV_18009119mg
See related
EnsemblRapid:ENSXLAG00005001166
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
lrp2bp
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Genomic context

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Location:
chromosome: 1S
Exon count:
11
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1S NC_054372.1 (33627101..33645798)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1S NC_030725.1 (33450648..33468963)

Chromosome 1S - NC_054372.1Genomic Context describing neighboring genes Neighboring gene ufm1-specific protease 2-like Neighboring gene ankyrin repeat domain 37 S homeolog Neighboring gene protein kinase C delta type-like Neighboring gene protein kinase C delta type-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC83482

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
LRP2-binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001091675.1 → NP_001085144.1  LRP2-binding protein

    Status: PROVISIONAL

    Source sequence(s)
    BC072346
    UniProtKB/Swiss-Prot
    Q6IND7
    UniProtKB/TrEMBL
    A0A974I054
    Related
    ENSXLAP00005003547.1, ENSXLAT00005003609.1
    Conserved Domains (4) summary
    smart00671
    Location:205 → 239
    SEL1; Sel1-like repeats
    COG0790
    Location:52 → 270
    TPR; TPR repeat [Signal transduction mechanisms]
    sd00010
    Location:106 → 142
    SLR; SLR repeat [structural motif]
    pfam08238
    Location:131 → 165
    Sel1; Sel1 repeat

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054372.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    33627101..33645798
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041574977.1 → XP_041430911.1  LRP2-binding protein isoform X1

    UniProtKB/TrEMBL
    A0A8J1LP20, A0A974I054
    Related
    ENSXLAP00005003553.1, ENSXLAT00005003615.1
    Conserved Domains (2) summary
    COG0790
    Location:52 → 270
    TPR; TPR repeat [Signal transduction mechanisms]
    sd00010
    Location:106 → 142
    SLR; SLR repeat [structural motif]

  2. XM_041574988.1 → XP_041430922.1  LRP2-binding protein isoform X2

    UniProtKB/TrEMBL
    A0A8J1LN15, A0A974I054
    Conserved Domains (2) summary
    COG0790
    Location:30 → 248
    TPR; TPR repeat [Signal transduction mechanisms]
    sd00010
    Location:84 → 120
    SLR; SLR repeat [structural motif]

  3. XM_041574987.1 → XP_041430921.1  LRP2-binding protein isoform X1

    UniProtKB/TrEMBL
    A0A8J1LP20, A0A974I054
    Conserved Domains (2) summary
    COG0790
    Location:52 → 270
    TPR; TPR repeat [Signal transduction mechanisms]
    sd00010
    Location:106 → 142
    SLR; SLR repeat [structural motif]
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6IND7.1 GenPept UniProtKB/Swiss-Prot:Q6IND7

Gene LinkOut

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