U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

eepd1.L endonuclease/exonuclease/phosphatase family domain containing 1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 432179, updated on 4-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
eepd1.L
Official Full Name
endonuclease/exonuclease/phosphatase family domain containing 1 L homeolog
Primary source
Xenbase:XB-GENE-6255983
Locus tag
XELAEV_18031284mg
See related
EnsemblRapid:ENSXLAG00005029514 AllianceGenome:Xenbase:XB-GENE-6255983
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
eepd1; hspc107
Summary
Predicted to enable DNA binding activity and catalytic activity. Predicted to act upstream of or within DNA repair. Orthologous to human EEPD1 (endonuclease/exonuclease/phosphatase family domain containing 1). [provided by Alliance of Genome Resources, Nov 2024]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See eepd1.L in Genome Data Viewer
Location:
chromosome: 6L
Exon count:
7
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6L NC_054381.1 (67996606..68039223, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6L NC_030734.1 (62617959..62660578, complement)

Chromosome 6L - NC_054381.1Genomic Context describing neighboring genes Neighboring gene anillin, actin binding protein L homeolog Neighboring gene microtubule associated tyrosine carboxypeptidase 2 L homeolog Neighboring gene septin 7 L homeolog Neighboring gene HERPUD family member 2 L homeolog

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Clone Names

  • MGC83496

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within DNA repair IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
endonuclease/exonuclease/phosphatase family domain-containing protein 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001091639.1 → NP_001085108.1  endonuclease/exonuclease/phosphatase family domain-containing protein 1

    See identical proteins and their annotated locations for NP_001085108.1

    Status: PROVISIONAL

    Source sequence(s)
    BC072349
    UniProtKB/Swiss-Prot
    Q6IND4
    UniProtKB/TrEMBL
    A0A974HFW9
    Related
    ENSXLAP00005088152.1, ENSXLAT00005089814.1
    Conserved Domains (3) summary
    cd10283
    Location:254 → 527
    MnuA_DNase1-like; Mycoplasma pulmonis MnuA nuclease-like
    COG1555
    Location:23 → 188
    ComEA; DNA uptake protein ComE and related DNA-binding proteins [Replication, recombination and repair]
    pfam12836
    Location:38 → 96
    HHH_3; Helix-hairpin-helix motif

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054381.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    67996606..68039223 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6IND4.1 GenPept UniProtKB/Swiss-Prot:Q6IND4

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.