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rbfox2.L RNA binding fox-1 homolog 2 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 432174, updated on 18-Sep-2024

Summary

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Official Symbol
rbfox2.L
Official Full Name
RNA binding fox-1 homolog 2 L homeolog
Primary source
Xenbase:XB-GENE-6255985
See related
EnsemblRapid:ENSXLAG00005033980
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
fxh; rta; fox2; rbm9; fox-2; rbm9b; xrbm9; hnrbp2; hrnbp2; rbfox2; rbm9-b; somi39; rbfox2-b; rbfox2.S
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Genomic context

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See rbfox2.L in Genome Data Viewer
Location:
chromosome: 4L
Exon count:
19
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4L NC_054377.1 (112286653..112462771, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4L NC_030730.1 (107032444..107209051, complement)

Chromosome 4L - NC_054377.1Genomic Context describing neighboring genes Neighboring gene LUC7-like 2 pre-mRNA splicing factor L homeolog Neighboring gene formation of mitochondrial complex V assembly factor 1 homolog L homeolog Neighboring gene small nucleolar RNA SNORA62/SNORA6 family Neighboring gene small nucleolar RNA SNORA62/SNORA6 family Neighboring gene ribosomal protein SA L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Xenopus Rbm9 is a novel interactor of XGld2 in the cytoplasmic polyadenylation complex. Papin C, et al. FEBS J, 2008 Feb. PMID 18177378
  2. An atlas of differential gene expression during early Xenopus embryogenesis. Pollet N, et al. Mech Dev, 2005 Mar. PMID 15763213
  3. Axeldb: a Xenopus laevis database focusing on gene expression. Pollet N, et al. Nucleic Acids Res, 2000 Jan 1. PMID 10592204, Free PMC Article
  4. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC78805

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within RNA splicing IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within mRNA processing IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within nervous system development IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
RNA binding protein fox-1 homolog 2
Names
Fox-1 homolog B
RNA binding fox-1 homolog 2 S homeolog
RNA binding motif protein 9 b
RNA binding protein, fox-1 homolog 2 S homeolog
RNA-binding motif protein 9
RNA-binding protein 9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001091634.2 → NP_001085103.2  RNA binding protein fox-1 homolog 2

    See identical proteins and their annotated locations for NP_001085103.2

    Status: PROVISIONAL

    Source sequence(s)
    AM419007
    UniProtKB/Swiss-Prot
    A4F5G6, A4F5G7
    UniProtKB/TrEMBL
    A0A974CZW2
    Related
    ENSXLAP00005102077.1, ENSXLAT00005104068.1
    Conserved Domains (3) summary
    COG0724
    Location:142 → 257
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12407
    Location:173 → 248
    RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
    pfam12414
    Location:282 → 383
    Fox-1_C; Calcitonin gene-related peptide regulator C terminal

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054377.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    112286653..112462771 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018256642.2 → XP_018112131.1  RNA binding protein fox-1 homolog 2 isoform X7

    UniProtKB/TrEMBL
    A0A8J0UY17, A0A974D2L3

  2. XM_018256643.2 → XP_018112132.1  RNA binding protein fox-1 homolog 2 isoform X8

    UniProtKB/TrEMBL
    A0A8J0UZ89, A0A974CZW2

  3. XM_018256637.2 → XP_018112126.1  RNA binding protein fox-1 homolog 2 isoform X3

    UniProtKB/TrEMBL
    A0A8J0UZ83, A0A974D2L3

  4. XM_018256635.2 → XP_018112124.1  RNA binding protein fox-1 homolog 2 isoform X1

    UniProtKB/TrEMBL
    A0A8J0UT20, A0A974D2L3

  5. XM_018256640.2 → XP_018112129.1  RNA binding protein fox-1 homolog 2 isoform X6

    UniProtKB/TrEMBL
    A0A8J0UT26, A0A974D2L3

  6. XM_018256639.2 → XP_018112128.1  RNA binding protein fox-1 homolog 2 isoform X5

    UniProtKB/TrEMBL
    A0A8J0UYZ6

  7. XM_018256638.2 → XP_018112127.1  RNA binding protein fox-1 homolog 2 isoform X4

    UniProtKB/TrEMBL
    A0A8J0V2X0, A0A974CZW2
    Related
    ENSXLAP00005101960.1, ENSXLAT00005103951.1

  8. XM_018256636.2 → XP_018112125.1  RNA binding protein fox-1 homolog 2 isoform X2

    UniProtKB/TrEMBL
    A0A8J0UY12, A0A974CZW2
    Related
    ENSXLAP00005101997.1, ENSXLAT00005103992.1

  9. XM_018256652.2 → XP_018112141.1  RNA binding protein fox-1 homolog 2 isoform X14

    UniProtKB/TrEMBL
    A0A8J0UZ94, A0A974D2L3

  10. XM_018256647.2 → XP_018112136.1  RNA binding protein fox-1 homolog 2 isoform X10

    UniProtKB/TrEMBL
    A0A8J0UZ01, A0A974D2L3
    Related
    ENSXLAP00005101919.1, ENSXLAT00005103908.1

  11. XM_018256646.2 → XP_018112135.1  RNA binding protein fox-1 homolog 2 isoform X9

    UniProtKB/TrEMBL
    A0A8J0V2X6, A0A974D2L3
    Related
    ENSXLAP00005101863.1, ENSXLAT00005103850.1

  12. XM_041589247.1 → XP_041445181.1  RNA binding protein fox-1 homolog 2 isoform X11

    UniProtKB/TrEMBL
    A0A8J1MUQ1, A0A974D2L3
    Related
    ENSXLAP00005101826.1, ENSXLAT00005103813.1
    Conserved Domains (2) summary
    pfam12414
    Location:253 → 355
    Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    cd12407
    Location:112 → 187
    RRM_FOX1_like; RNA recognition motif (RRM) found in vertebrate RNA binding protein fox-1 homologs and similar proteins

  13. XM_018256651.2 → XP_018112140.1  RNA binding protein fox-1 homolog 2 isoform X13

    UniProtKB/TrEMBL
    A0A8J0UY24, A0A974D2L3
    Related
    ENSXLAP00005102127.1, ENSXLAT00005104118.1

  14. XM_018256650.2 → XP_018112139.1  RNA binding protein fox-1 homolog 2 isoform X12

    UniProtKB/TrEMBL
    A0A8J0UT34, A0A974D2L3
    Related
    ENSXLAP00005101733.1, ENSXLAT00005103720.1

RNA

  1. XR_005966769.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A4F5G6.1 GenPept UniProtKB/Swiss-Prot:A4F5G6

Gene LinkOut

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