trim54.S tripartite motif containing 54 S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: trim54.S
Official Full Name: tripartite motif containing 54 S homeolog
Primary source: Xenbase:XB-GENE-5796597
Locus tag: XELAEV_18030326mg
See related: EnsemblRapid:ENSXLAG00005000060 AllianceGenome:Xenbase:XB-GENE-5796597
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: murf; rnf30; murf-3; trim54; trim54.L
Summary: Predicted to enable ubiquitin protein ligase activity and zinc ion binding activity. Predicted to act upstream of or within protein ubiquitination. Predicted to be located in Z disc and microtubule. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

Location:: chromosome: 5S

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	5S	NC_054380.1 (143019525..143039959, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	5S	NC_030733.1 (136218356..136239520, complement)

Chromosome 5S - NC_054380.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables ubiquitin protein ligase activity	IEA Inferred from Electronic Annotation more info
enables zinc ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within protein ubiquitination	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in Z disc	IEA Inferred from Electronic Annotation more info
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in microtubule	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: tripartite motif containing 54 S homeolog

Names: tripartite motif containing 54 L homeolog; tripartite motif-containing 54

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001091626.1 → NP_001085095.1 tripartite motif containing 54 S homeolog

See identical proteins and their annotated locations for NP_001085095.1

Status: PROVISIONAL

Source sequence(s)

BC072166

UniProtKB/TrEMBL

Q6INV6

Related

ENSXLAP00005000078.1, ENSXLAT00005000102.1

Conserved Domains (3) summary

smart00336
Location:124 → 163

BBOX; B-Box-type zinc finger

cd00162
Location:26 → 85

RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...

cl23765
Location:170 → 295

iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054380.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

143019525..143039959 complement

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GenBank, FASTA, Sequence Viewer (Graphics)