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znf577.S zinc finger protein 577 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 432162, updated on 4-Nov-2024

Summary

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Official Symbol
znf577.S
Official Full Name
zinc finger protein 577 S homeolog
Primary source
Xenbase:XB-GENE-6255990
Locus tag
XELAEV_18032720mg
See related
EnsemblRapid:ENSXLAG00005024564 AllianceGenome:Xenbase:XB-GENE-6255990
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
znf577
Summary
Predicted to enable metal ion binding activity. Predicted to act upstream of or within regulation of DNA-templated transcription. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See znf577.S in Genome Data Viewer
Location:
chromosome: 6S
Exon count:
4
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6S NC_054382.1 (2901788..2912684, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6S NC_030735.1 (2487166..2498062, complement)

Chromosome 6S - NC_054382.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 250 S homeolog Neighboring gene zinc finger protein 852 S homeolog Neighboring gene uncharacterized LOC108719789 Neighboring gene small nucleolar RNA SNORA9 Neighboring gene small nucleolar RNA SNORA16B/SNORA16A family

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC81065

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger protein 577 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001091622.1 → NP_001085091.1  zinc finger protein 577 S homeolog

    See identical proteins and their annotated locations for NP_001085091.1

    Status: PROVISIONAL

    Source sequence(s)
    BC072197
    UniProtKB/TrEMBL
    A0A974HDQ6, Q6INS6
    Related
    ENSXLAP00005072826.1, ENSXLAT00005074386.1
    Conserved Domains (3) summary
    cd07765
    Location:11 → 50
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
    smart00349
    Location:11 → 68
    KRAB; krueppel associated box
    sd00017
    Location:140 → 160
    ZF_C2H2; C2H2 Zn finger [structural motif]

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054382.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    2901788..2912684 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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