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pdgfrl.L platelet derived growth factor receptor like L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 432156, updated on 4-Nov-2024

Summary

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Official Symbol
pdgfrl.L
Official Full Name
platelet derived growth factor receptor like L homeolog
Primary source
Xenbase:XB-GENE-921452
Locus tag
XELAEV_18005324mg
See related
EnsemblRapid:ENSXLAG00005004807 AllianceGenome:Xenbase:XB-GENE-921452
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
pdgfrl
Summary
Predicted to be located in extracellular region. Human ortholog(s) of this gene implicated in colorectal cancer and hepatocellular carcinoma. Orthologous to human PDGFRL (platelet derived growth factor receptor like). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See pdgfrl.L in Genome Data Viewer
Location:
chromosome: 1L
Exon count:
6
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1L NC_054371.1 (44418597..44460703)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1L NC_030724.1 (35171145..35214072)

Chromosome 1L - NC_054371.1Genomic Context describing neighboring genes Neighboring gene myotubularin related protein 7 L homeolog Neighboring gene solute carrier family 7 member 2 gene 1 L homeolog Neighboring gene microtubule associated scaffold protein 1 L homeolog Neighboring gene protein kinase C delta type

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC82397

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
platelet derived growth factor receptor like L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001091616.1 → NP_001085085.1  platelet derived growth factor receptor like L homeolog precursor

    See identical proteins and their annotated locations for NP_001085085.1

    Status: PROVISIONAL

    Source sequence(s)
    BC072269
    UniProtKB/TrEMBL
    A0A974I2I7, Q6INL1
    Related
    ENSXLAP00005014335.1, ENSXLAT00005014531.1
    Conserved Domains (3) summary
    smart00410
    Location:82 → 153
    IG_like; Immunoglobulin like
    pfam07679
    Location:270 → 365
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:291 → 361
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054371.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    44418597..44460703
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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