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imp3.L IMP3, U3 small nucleolar ribonucleoprotein L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 432130, updated on 17-Aug-2024

Summary

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Official Symbol
imp3.L
Official Full Name
IMP3, U3 small nucleolar ribonucleoprotein L homeolog
Primary source
Xenbase:XB-GENE-5867692
Locus tag
XELAEV_18023584mg
See related
EnsemblRapid:ENSXLAG00005023272
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
imp3
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Genomic context

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Location:
chromosome: 4L
Exon count:
7
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4L NC_054377.1 (115511585..115563358)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4L NC_030730.1 (110170369..110222243)

Chromosome 4L - NC_054377.1Genomic Context describing neighboring genes Neighboring gene Ro60, Y RNA binding protein L homeolog Neighboring gene notch 2 L homeolog Neighboring gene uncharacterized LOC121403096 Neighboring gene U2 spliceosomal RNA Neighboring gene SEC22 homolog B, vesicle trafficking protein L homeolog Neighboring gene protein kinase, AMP-activated, beta 2 non-catalytic subunit L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning. Kırlı K, et al. Elife, 2015 Dec 17. PMID 26673895, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Clone Names

  • MGC81216

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables rRNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within ribosome biogenesis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
  
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
IMP3, U3 small nucleolar ribonucleoprotein L homeolog
Names
IMP3, U3 small nucleolar ribonucleoprotein, homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001091591.1 → NP_001085060.1  IMP3, U3 small nucleolar ribonucleoprotein L homeolog

    See identical proteins and their annotated locations for NP_001085060.1

    Status: PROVISIONAL

    Source sequence(s)
    BC072209
    UniProtKB/TrEMBL
    A0A974D5D8, Q6INR4
    Related
    ENSXLAP00005068699.1, ENSXLAT00005070233.1
    Conserved Domains (3) summary
    COG0522
    Location:1 → 176
    RpsD; Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]
    pfam00163
    Location:5 → 55
    Ribosomal_S4; Ribosomal protein S4/S9 N-terminal domain
    pfam01479
    Location:108 → 154
    S4; S4 domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054377.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    115511585..115563358
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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