U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

cnot6l.L CCR4-NOT transcription complex subunit 6-like L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 432104, updated on 4-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
cnot6l.L
Official Full Name
CCR4-NOT transcription complex subunit 6-like L homeolog
Primary source
Xenbase:XB-GENE-6256009
Locus tag
XELAEV_18005866mg
See related
EnsemblRapid:ENSXLAG00005034956 AllianceGenome:Xenbase:XB-GENE-6256009
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
ccr4b; cnot6l; cnot6l-a; cnot6l-b
Summary
Predicted to enable metal ion binding activity and poly(A)-specific ribonuclease activity. Predicted to act upstream of or within mRNA processing and regulation of gene expression. Predicted to be located in cytoplasm and nucleus. Predicted to be part of CCR4-NOT complex. Orthologous to human CNOT6L (CCR4-NOT transcription complex subunit 6 like). [provided by Alliance of Genome Resources, Nov 2024]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See cnot6l.L in Genome Data Viewer
Location:
chromosome: 1L
Exon count:
15
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1L NC_054371.1 (87589465..87626855, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1L NC_030724.1 (76682377..76719830, complement)

Chromosome 1L - NC_054371.1Genomic Context describing neighboring genes Neighboring gene C-X-C motif chemokine ligand 13 L homeolog Neighboring gene C-X-C motif chemokine 13 Neighboring gene uncharacterized LOC121403519 Neighboring gene mitochondrial ribosomal protein L1 L homeolog

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Clone Names

  • MGC81488

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables exonuclease activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables poly(A)-specific ribonuclease activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within mRNA processing IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within nuclear-transcribed mRNA poly(A) tail shortening IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of translation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulatory ncRNA-mediated gene silencing IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of CCR4-NOT complex IEA
Inferred from Electronic Annotation
more info
  
part_of CCR4-NOT complex ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

Go to the top of the page Help
Preferred Names
CCR4-NOT transcription complex subunit 6-like-A
Names
CCR4-NOT transcription complex, subunit 6-like
NP_001085037.1
XP_018100103.1
XP_018100111.1
XP_018100120.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001091568.1 → NP_001085037.1  CCR4-NOT transcription complex subunit 6-like-A

    See identical proteins and their annotated locations for NP_001085037.1

    Status: PROVISIONAL

    Source sequence(s)
    BC071015
    UniProtKB/Swiss-Prot
    Q6IR85
    UniProtKB/TrEMBL
    A0A974I3T4
    Related
    ENSXLAP00005104614.1, ENSXLAT00005106644.1
    Conserved Domains (4) summary
    cd10312
    Location:186 → 533
    Deadenylase_CCR4b; C-terminal deadenylase domain of CCR4b, also known as CCR4-NOT transcription complex subunit 6-like
    sd00031
    Location:33 → 52
    LRR_1; leucine-rich repeat [structural motif]
    pfam12799
    Location:51 → 91
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:51 → 132
    LRR_8; Leucine rich repeat

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054371.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    87589465..87626855 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018244622.2 → XP_018100111.1  CCR4-NOT transcription complex subunit 6-like-A isoform X2

    UniProtKB/Swiss-Prot
    Q6IR85
    UniProtKB/TrEMBL
    A0A974I3T4

  2. XM_018244614.2 → XP_018100103.1  CCR4-NOT transcription complex subunit 6-like-A isoform X1

    UniProtKB/TrEMBL
    A0A8J0UDU2
    Related
    ENSXLAP00005104726.1, ENSXLAT00005106761.1

  3. XM_018244631.2 → XP_018100120.1  CCR4-NOT transcription complex subunit 6-like-A isoform X2

    UniProtKB/Swiss-Prot
    Q6IR85
    UniProtKB/TrEMBL
    A0A974I3T4
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6IR85.1 GenPept UniProtKB/Swiss-Prot:Q6IR85

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials