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hif1an.S hypoxia inducible factor 1 subunit alpha inhibitor S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 432095, updated on 17-Aug-2024

Summary

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Official Symbol
hif1an.S
Official Full Name
hypoxia inducible factor 1 subunit alpha inhibitor S homeolog
Primary source
Xenbase:XB-GENE-966949
Locus tag
XELAEV_18037121mg
See related
EnsemblRapid:ENSXLAG00005005276
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
fih1; hif1an
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Genomic context

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See hif1an.S in Genome Data Viewer
Location:
chromosome: 7S
Exon count:
10
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 7S NC_054384.1 (31667215..31695957)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 7S NC_030737.1 (30167186..30186535)

Chromosome 7S - NC_054384.1Genomic Context describing neighboring genes Neighboring gene protein FAM135A-like Neighboring gene NADH:ubiquinone oxidoreductase subunit B8 S homeolog Neighboring gene uncharacterized LOC108697492 Neighboring gene paired box protein Pax-2-B-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning. Kırlı K, et al. Elife, 2015 Dec 17. PMID 26673895, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Clone Names

  • MGC84481

General protein information

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Preferred Names
hypoxia inducible factor 1 subunit alpha inhibitor S homeolog; hypoxia-inducible factor 1-alpha inhibitor
Names
hypoxia-inducible factor 1, alpha subunit inhibitor S homeolog
XP_041427030.1
XP_041427031.1
XP_041427032.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054384.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    31667215..31695957
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041571098.1 → XP_041427032.1  hypoxia-inducible factor 1-alpha inhibitor isoform X2

    UniProtKB/TrEMBL
    A0A8J1LBY2, A0A974CEP3
    Conserved Domains (2) summary
    smart00558
    Location:122 → 172
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    cl40423
    Location:224 → 268
    cupin_RmlC-like; RmlC-like cupin superfamily

  2. XM_041571096.1 → XP_041427030.1  hypoxia-inducible factor 1-alpha inhibitor isoform X1

    UniProtKB/TrEMBL
    A0A974CCT4, A0A974CEP3, Q6IR51
    Conserved Domains (1) summary
    pfam13621
    Location:56 → 300
    Cupin_8; Cupin-like domain

  3. XM_041571097.1 → XP_041427031.1  hypoxia-inducible factor 1-alpha inhibitor isoform X1

    UniProtKB/TrEMBL
    A0A974CCT4, A0A974CEP3, Q6IR51
    Related
    ENSXLAP00005015539.1, ENSXLAT00005015826.1
    Conserved Domains (1) summary
    pfam13621
    Location:56 → 300
    Cupin_8; Cupin-like domain

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001091559.1: Suppressed sequence

    Description
    NM_001091559.1: This RefSeq was removed because it is a nonsense-mediated mRNA decay (NMD) candidate.
Nucleotide Protein Strain
Heading Accession and Version

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