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XB5897337.L uncharacterized XB5897337 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 432082, updated on 4-Nov-2024

Summary

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Symbol
XB5897337.L
Full Name
uncharacterized XB5897337 L homeolog
Primary source
Xenbase:XB-GENE-5897348
Locus tag
XELAEV_18027142mg
See related
EnsemblRapid:ENSXLAG00005033826 AllianceGenome:Xenbase:XB-GENE-5897348
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
LOC496998.L
Summary
Predicted to enable sulfotransferase activity. Predicted to act upstream of or within sulfation. Predicted to be located in cytoplasm. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See XB5897337.L in Genome Data Viewer
Location:
chromosome: 5L
Exon count:
10
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 5L NC_054379.1 (78013266..78027075)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 5L NC_030732.1 (75800700..75806250)

Chromosome 5L - NC_054379.1Genomic Context describing neighboring genes Neighboring gene G-protein coupled receptor family C group 6 member A Neighboring gene family with sequence similarity 162 member B L homeolog Neighboring gene uncharacterized LOC121393533 Neighboring gene amine sulfotransferase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC80042

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within sulfation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC432082

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001091549.1 → NP_001085018.1  uncharacterized protein LOC432082

    See identical proteins and their annotated locations for NP_001085018.1

    Status: PREDICTED

    Source sequence(s)
    BC071004
    UniProtKB/TrEMBL
    Q6IR96
    Related
    ENSXLAP00005100952.1, ENSXLAT00005102919.1
    Conserved Domains (1) summary
    pfam00685
    Location:42 → 197
    Sulfotransfer_1; Sulfotransferase domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054379.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    78013266..78027075
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041562175.1 → XP_041418109.1  uncharacterized protein LOC432082 isoform X1

    UniProtKB/TrEMBL
    A0A1L8G8Y7, A0A974CX27
    Conserved Domains (1) summary
    pfam00685
    Location:42 → 287
    Sulfotransfer_1; Sulfotransferase domain

  2. XM_041562174.1 → XP_041418108.1  uncharacterized protein LOC432082 isoform X1

    UniProtKB/TrEMBL
    A0A1L8G8Y7, A0A974CX27
    Related
    ENSXLAP00005100982.1, ENSXLAT00005102952.1
    Conserved Domains (1) summary
    pfam00685
    Location:42 → 287
    Sulfotransfer_1; Sulfotransferase domain

  3. XM_018261829.2 → XP_018117318.1  uncharacterized protein LOC432082 isoform X1

    UniProtKB/TrEMBL
    A0A1L8G8Y7, A0A974CX27
    Conserved Domains (1) summary
    pfam00685
    Location:42 → 287
    Sulfotransfer_1; Sulfotransferase domain
Nucleotide Protein Strain
Heading Accession and Version

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