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bckdk.S branched chain ketoacid dehydrogenase kinase S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 432076, updated on 18-Sep-2024

Summary

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Official Symbol
bckdk.S
Official Full Name
branched chain ketoacid dehydrogenase kinase S homeolog
Primary source
Xenbase:XB-GENE-994841
Locus tag
XELAEV_18004554mg
See related
EnsemblRapid:ENSXLAG00005008421
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
bckdk
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Genomic context

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See bckdk.S in Genome Data Viewer
Location:
chromosome: 9_10S
Exon count:
15
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10S NC_054388.1 (112994121..113014957)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016694878.1 (409527..421981, complement)

Chromosome 9_10S - NC_054388.1Genomic Context describing neighboring genes Neighboring gene zinc-binding protein A33 Neighboring gene Nuclear factor 7 S homeolog Neighboring gene cardiotrophin-2 Neighboring gene F-box and leucine-rich repeat protein 19 S homeolog Neighboring gene SET domain containing 1A S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC78818

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables pyruvate dehydrogenase (acetyl-transferring) kinase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within phosphorylation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein phosphorylation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of glucose metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in mitochondrial matrix IEA
Inferred from Electronic Annotation
more info
  
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
branched chain ketoacid dehydrogenase kinase S homeolog
XP_041433898.1
XP_041433899.1
XP_041433900.1
XP_041433901.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001091543.1 → NP_001085012.1  branched chain ketoacid dehydrogenase kinase S homeolog

    See identical proteins and their annotated locations for NP_001085012.1

    Status: PROVISIONAL

    Source sequence(s)
    BC070978
    UniProtKB/TrEMBL
    A0A8J1LWM9, A0A974GZT9, A0AA97PYY9, Q6IRC1
    Conserved Domains (2) summary
    cd16929
    Location:227 → 402
    HATPase_PDK-like; Histidine kinase-like ATPase domain of pyruvate dehydrogenase kinase, branched-chain alpha-ketoacid dehydrogenase kinase and related domains
    pfam10436
    Location:69 → 222
    BCDHK_Adom3; Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054388.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    112994121..113014957
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041577965.1 → XP_041433899.1  branched chain ketoacid dehydrogenase kinase S homeolog

    UniProtKB/TrEMBL
    A0A8J1LWM9, A0A974GZT9, A0AA97PYY9, Q6IRC1
    Related
    ENSXLAP00005024312.1, ENSXLAT00005025020.1
    Conserved Domains (2) summary
    cd16929
    Location:227 → 402
    HATPase_PDK-like; Histidine kinase-like ATPase domain of pyruvate dehydrogenase kinase, branched-chain alpha-ketoacid dehydrogenase kinase and related domains
    pfam10436
    Location:69 → 222
    BCDHK_Adom3; Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase

  2. XM_041577967.1 → XP_041433901.1  branched chain ketoacid dehydrogenase kinase S homeolog

    UniProtKB/TrEMBL
    A0A8J1LWM9, A0A974GZT9, A0AA97PYY9, Q6IRC1
    Related
    ENSXLAP00005024353.1, ENSXLAT00005025061.1
    Conserved Domains (2) summary
    cd16929
    Location:227 → 402
    HATPase_PDK-like; Histidine kinase-like ATPase domain of pyruvate dehydrogenase kinase, branched-chain alpha-ketoacid dehydrogenase kinase and related domains
    pfam10436
    Location:69 → 222
    BCDHK_Adom3; Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase

  3. XM_041577964.1 → XP_041433898.1  branched chain ketoacid dehydrogenase kinase S homeolog

    UniProtKB/TrEMBL
    A0A8J1LWM9, A0A974GZT9, A0AA97PYY9, Q6IRC1
    Related
    ENSXLAP00005024336.1, ENSXLAT00005025044.1
    Conserved Domains (2) summary
    cd16929
    Location:227 → 402
    HATPase_PDK-like; Histidine kinase-like ATPase domain of pyruvate dehydrogenase kinase, branched-chain alpha-ketoacid dehydrogenase kinase and related domains
    pfam10436
    Location:69 → 222
    BCDHK_Adom3; Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase

  4. XM_041577966.1 → XP_041433900.1  branched chain ketoacid dehydrogenase kinase S homeolog

    UniProtKB/TrEMBL
    A0A8J1LWM9, A0A974GZT9, A0AA97PYY9, Q6IRC1
    Related
    ENSXLAP00005024326.1, ENSXLAT00005025034.1
    Conserved Domains (2) summary
    cd16929
    Location:227 → 402
    HATPase_PDK-like; Histidine kinase-like ATPase domain of pyruvate dehydrogenase kinase, branched-chain alpha-ketoacid dehydrogenase kinase and related domains
    pfam10436
    Location:69 → 222
    BCDHK_Adom3; Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase
Nucleotide Protein Strain
Heading Accession and Version

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