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ccn1l.L cellular communication network factor 1 like L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 432074, updated on 4-Nov-2024

Summary

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Official Symbol
ccn1l.L
Official Full Name
cellular communication network factor 1 like L homeolog
Primary source
Xenbase:XB-GENE-22064066
Locus tag
XELAEV_18038173mg
See related
EnsemblRapid:ENSXLAG00005018912 AllianceGenome:Xenbase:XB-GENE-22064066
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
cyr61l
Summary
Predicted to enable growth factor binding activity; heparin binding activity; and integrin binding activity. Predicted to act upstream of or within cell adhesion and signal transduction. Predicted to be located in extracellular matrix and extracellular region. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See ccn1l.L in Genome Data Viewer
Location:
chromosome: 8L
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8L NC_054385.1 (1466697..1477333)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8L NC_030738.1 (1306249..1316507)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016721246.1 (177..633, complement)

Chromosome 8L - NC_054385.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121396849 Neighboring gene GLI pathogenesis-related 2 L homeolog Neighboring gene uncharacterized LOC108698119 Neighboring gene LIM domain only 4, gene 2 L homeolog Neighboring gene uncharacterized LOC108698122 Neighboring gene solute carrier family 34 (type II sodium/phosphate cotransporter), member 3 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC82209

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables growth factor binding IEA
Inferred from Electronic Annotation
more info
  
enables heparin binding IEA
Inferred from Electronic Annotation
more info
  
enables integrin binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cell adhesion IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within signal transduction IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
  
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC432074

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001091541.1 → NP_001085010.1  uncharacterized protein LOC432074 precursor

    See identical proteins and their annotated locations for NP_001085010.1

    Status: PREDICTED

    Source sequence(s)
    BC071021
    UniProtKB/TrEMBL
    A0A974C6B1, Q6IR79
    Related
    ENSXLAP00005055788.1, ENSXLAT00005057017.1
    Conserved Domains (3) summary
    smart00214
    Location:104 → 164
    VWC; von Willebrand factor (vWF) type C domain
    pfam00219
    Location:30 → 82
    IGFBP; Insulin-like growth factor binding protein
    cl21545
    Location:295 → 364
    GHB_like; Glycoprotein hormone beta chain homologues

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054385.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    1466697..1477333
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials