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arl5a.S ARF like GTPase 5A S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 431989, updated on 4-Nov-2024

Summary

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Official Symbol
arl5a.S
Official Full Name
ARF like GTPase 5A S homeolog
Primary source
Xenbase:XB-GENE-6487157
Locus tag
XELAEV_18047092mg
See related
EnsemblRapid:ENSXLAG00005013419 AllianceGenome:Xenbase:XB-GENE-6487157
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
arl5; arl5a; arl5c; arflp5
Summary
Predicted to enable GTP binding activity and GTPase activity. Predicted to act upstream of or within intracellular protein transport; protein localization to Golgi membrane; and vesicle-mediated transport. Predicted to be located in trans-Golgi network. Orthologous to human ARL5A (ADP ribosylation factor like GTPase 5A). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See arl5a.S in Genome Data Viewer
Location:
chromosome: 9_10S
Exon count:
6
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10S NC_054388.1 (59989018..59999611, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10S NC_030741.1 (53308336..53318949, complement)

Chromosome 9_10S - NC_054388.1Genomic Context describing neighboring genes Neighboring gene replication timing regulatory factor 1 S homeolog Neighboring gene nebulin S homeolog Neighboring gene calcium channel, voltage-dependent, beta 4 subunit S homeolog Neighboring gene signal transducing adaptor molecule 2 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC81470

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
  
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within intracellular protein transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein localization to Golgi membrane IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ARF like GTPase 5A S homeolog
Names
ADP ribosylation factor like GTPase 5A S homeolog
ADP-ribosylation factor-like 5A
ADP-ribosylation factor-like 5C

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001091463.1 → NP_001084932.1  ARF like GTPase 5A S homeolog

    See identical proteins and their annotated locations for NP_001084932.1

    Status: PROVISIONAL

    Source sequence(s)
    BC070635
    UniProtKB/TrEMBL
    A0A974BUE0, Q6NRT4
    Related
    ENSXLAP00005039616.1, ENSXLAT00005040536.1
    Conserved Domains (1) summary
    cd04153
    Location:3 → 175
    Arl5_Arl8; Arf-like 5 (Arl5) and 8 (Arl8) GTPases

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054388.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    59989018..59999611 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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