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dhps.S deoxyhypusine synthase S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 431985, updated on 4-Nov-2024

Summary

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Official Symbol
dhps.S
Official Full Name
deoxyhypusine synthase S homeolog
Primary source
Xenbase:XB-GENE-958713
Locus tag
XELAEV_18000812mg
See related
EnsemblRapid:ENSXLAG00005011370 AllianceGenome:Xenbase:XB-GENE-958713
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
dhps
Summary
Predicted to enable deoxyhypusine synthase activity. Predicted to act upstream of or within peptidyl-lysine modification to peptidyl-hypusine. Predicted to be located in cytoplasm. Orthologous to human DHPS (deoxyhypusine synthase). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See dhps.S in Genome Data Viewer
Location:
chromosome: 3S
Exon count:
12
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3S NC_054376.1 (125610825..125631639, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016694811.1 (2125774..2133719, complement)

Chromosome 3S - NC_054376.1Genomic Context describing neighboring genes Neighboring gene tRNA methyltransferase 1 S homeolog Neighboring gene WD repeat domain 83 opposite strand S homeolog Neighboring gene F-box and WD repeat domain containing 9 S homeolog Neighboring gene transportin 2 S homeolog Neighboring gene small nucleolar RNA SNORD41

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC82178

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables deoxyhypusine synthase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within peptidyl-lysine modification to peptidyl-hypusine IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
deoxyhypusine synthase S homeolog
NP_001084929.1
XP_041443524.1
XP_041443525.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001091460.1 → NP_001084929.1  deoxyhypusine synthase S homeolog

    See identical proteins and their annotated locations for NP_001084929.1

    Status: PROVISIONAL

    Source sequence(s)
    BC070647
    UniProtKB/TrEMBL
    A0A974DG49, Q6NRS5
    Related
    ENSXLAP00005033295.1, ENSXLAT00005034120.1
    Conserved Domains (1) summary
    pfam01916
    Location:41 → 331
    DS; Deoxyhypusine synthase

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054376.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    125610825..125631639 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041587590.1 → XP_041443524.1  deoxyhypusine synthase S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1MP09, A0A974DG49
    Related
    ENSXLAP00005033292.1, ENSXLAT00005034117.1
    Conserved Domains (1) summary
    pfam01916
    Location:48 → 338
    DS; Deoxyhypusine synthase

  2. XM_041587591.1 → XP_041443525.1  deoxyhypusine synthase S homeolog isoform X2

    UniProtKB/TrEMBL
    A0A974DG49, Q6NRS5
    Conserved Domains (1) summary
    pfam01916
    Location:41 → 331
    DS; Deoxyhypusine synthase
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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