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zbtb18.S zinc finger and BTB domain containing 18 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 431971, updated on 18-Sep-2024

Summary

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Official Symbol
zbtb18.S
Official Full Name
zinc finger and BTB domain containing 18 S homeolog
Primary source
Xenbase:XB-GENE-17336772
Locus tag
XELAEV_18029159mg
See related
EnsemblRapid:ENSXLAG00005002592
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
zbtb18.3; znf238.3
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Genomic context

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See zbtb18.S in Genome Data Viewer
Location:
chromosome: 5S
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 5S NC_054380.1 (52081722..52089073)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 5S NC_030733.1 (51522370..51529720)

Chromosome 5S - NC_054380.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121394068 Neighboring gene protein NYNRIN-like Neighboring gene uncharacterized LOC108717899 Neighboring gene uncharacterized LOC108717900

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC83675

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger and BTB domain-containing protein 18.3
Names
zinc finger protein 238.3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001091450.1 → NP_001084919.1  zinc finger and BTB domain-containing protein 18.3

    See identical proteins and their annotated locations for NP_001084919.1

    Status: PROVISIONAL

    Source sequence(s)
    BC070718
    UniProtKB/Swiss-Prot
    Q6NRM8
    UniProtKB/TrEMBL
    A0A1L8G2X8, A0A974HHU6
    Related
    ENSXLAP00005007709.1, ENSXLAT00005007832.1
    Conserved Domains (3) summary
    sd00017
    Location:409 → 429
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl38908
    Location:1 → 147
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
    pfam13465
    Location:422 → 444
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054380.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    52081722..52089073
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018264342.2 → XP_018119831.1  zinc finger and BTB domain-containing protein 18.3 isoform X2

    UniProtKB/Swiss-Prot
    Q6NRM8
    UniProtKB/TrEMBL
    A0A1L8G2X8, A0A974HHU6
    Conserved Domains (3) summary
    sd00017
    Location:409 → 429
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl38908
    Location:1 → 147
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
    pfam13465
    Location:422 → 444
    zf-H2C2_2; Zinc-finger double domain

  2. XM_018264343.2 → XP_018119832.1  zinc finger and BTB domain-containing protein 18.3 isoform X2

    UniProtKB/Swiss-Prot
    Q6NRM8
    UniProtKB/TrEMBL
    A0A1L8G2X8, A0A974HHU6
    Conserved Domains (3) summary
    sd00017
    Location:409 → 429
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl38908
    Location:1 → 147
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
    pfam13465
    Location:422 → 444
    zf-H2C2_2; Zinc-finger double domain

  3. XM_041563981.1 → XP_041419915.1  zinc finger and BTB domain-containing protein 18.3 isoform X2

    UniProtKB/Swiss-Prot
    Q6NRM8
    UniProtKB/TrEMBL
    A0A1L8G2X8, A0A974HHU6
    Related
    ENSXLAP00005007705.1, ENSXLAT00005007828.1
    Conserved Domains (3) summary
    sd00017
    Location:409 → 429
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl38908
    Location:1 → 147
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
    pfam13465
    Location:422 → 444
    zf-H2C2_2; Zinc-finger double domain

  4. XM_018264341.2 → XP_018119830.1  zinc finger and BTB domain-containing protein 18.3 isoform X1

    UniProtKB/TrEMBL
    A0A8J0VDJ2
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6NRM8.1 GenPept UniProtKB/Swiss-Prot:Q6NRM8

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