U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ssx2ip.L synovial sarcoma, X breakpoint 2 interacting protein L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 431921, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
ssx2ip.L
Official Full Name
synovial sarcoma, X breakpoint 2 interacting protein L homeolog
Primary source
Xenbase:XB-GENE-17342025
Locus tag
XELAEV_18022889mg
See related
EnsemblRapid:ENSXLAG00005013293
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
adip; msd1; ADIP-B; ssx2ip; ssx2ip-b
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See ssx2ip.L in Genome Data Viewer
Location:
chromosome: 4L
Exon count:
14
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4L NC_054377.1 (72082394..72104937)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4L NC_030730.1 (66785346..66808602)

Chromosome 4L - NC_054377.1Genomic Context describing neighboring genes Neighboring gene lysophosphatidic acid receptor 3 L homeolog Neighboring gene atrial natriuretic peptide receptor 1 Neighboring gene vitellogenin A2 L homeolog Neighboring gene vitellogenin-A2

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Clone Names

  • MGC81138

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables microtubule minus-end binding ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cell adhesion IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within centrosome cycle ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within intraciliary transport involved in cilium assembly IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
  
located_in anchoring junction IEA
Inferred from Electronic Annotation
more info
  
located_in centriolar satellite IEA
Inferred from Electronic Annotation
more info
  
located_in centriolar satellite ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in ciliary basal body IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
  
located_in microtubule IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
afadin- and alpha-actinin-binding protein B
Names
Afadin DIL domain-interacting protein B
SSX2-interacting protein B

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001091403.1 → NP_001084872.1  afadin- and alpha-actinin-binding protein B

    See identical proteins and their annotated locations for NP_001084872.1

    Status: PROVISIONAL

    Source sequence(s)
    BC070587
    UniProtKB/Swiss-Prot
    Q6NRX3
    UniProtKB/TrEMBL
    A0A974D404
    Conserved Domains (1) summary
    pfam11559
    Location:55 → 205
    ADIP; Afadin- and alpha -actinin-Binding

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054377.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    72082394..72104937
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041589233.1 → XP_041445167.1  afadin- and alpha-actinin-binding protein B isoform X2

    UniProtKB/TrEMBL
    A0A8J1MTT0, A0A974D404
    Related
    ENSXLAP00005039234.1, ENSXLAT00005040155.1
    Conserved Domains (1) summary
    COG1196
    Location:79 → 443
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  2. XM_041589232.1 → XP_041445166.1  afadin- and alpha-actinin-binding protein B isoform X1

    UniProtKB/TrEMBL
    A0A8J1MUN7, A0A974D404
    Conserved Domains (1) summary
    COG1196
    Location:79 → 443
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6NRX3.1 GenPept UniProtKB/Swiss-Prot:Q6NRX3

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.