exd1.L exonuclease 3'-5' domain containing 1 L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: exd1.L
Official Full Name: exonuclease 3'-5' domain containing 1 L homeolog
Primary source: Xenbase:XB-GENE-993344
Locus tag: XELAEV_18040081mg
See related: EnsemblRapid:ENSXLAG00005017195
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: exd1; exdl1
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Genomic context

Location:: chromosome: 8L

Exon count:: 14

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	8L	NC_054385.1 (108999726..109024400, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	8L	NC_030738.1 (94235820..94260491, complement)

Chromosome 8L - NC_054385.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables 3'-5' exonuclease activity	IEA Inferred from Electronic Annotation more info
NOT enables 3'-5' exonuclease activity	ISS Inferred from Sequence or Structural Similarity more info
enables RNA binding	IEA Inferred from Electronic Annotation more info
enables RNA binding	ISS Inferred from Sequence or Structural Similarity more info
enables nucleic acid binding	IEA Inferred from Electronic Annotation more info
enables protein homodimerization activity	ISS Inferred from Sequence or Structural Similarity more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within meiotic cell cycle	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within nucleobase-containing compound metabolic process	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within piRNA processing	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within piRNA processing	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within regulatory ncRNA-mediated gene silencing	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within regulatory ncRNA-mediated gene silencing	ISS Inferred from Sequence or Structural Similarity more info

Component	Evidence Code	Pubs
located_in P granule	ISS Inferred from Sequence or Structural Similarity more info
part_of PET complex	IEA Inferred from Electronic Annotation more info
part_of PET complex	ISS Inferred from Sequence or Structural Similarity more info
located_in cytoplasm	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: piRNA biogenesis protein EXD1

Names: Exonuclease 3'-5' domain-like-containing protein 1; exonuclease 3'-5' domain-containing protein 1; inactive exonuclease EXD1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001091380.1 → NP_001084849.2 piRNA biogenesis protein EXD1

Status: PROVISIONAL

Source sequence(s)

BC070821

UniProtKB/Swiss-Prot

Q6NRD5

Related

ENSXLAP00005050727.1, ENSXLAT00005051884.1

Conserved Domains (1) summary

cd06148
Location:150 → 348

Egl_like_exo; DEDDy 3'-5' exonuclease domain of Drosophila Egalitarian (Egl) and similar proteins

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054385.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

108999726..109024400 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_018228835.2 → XP_018084324.1 piRNA biogenesis protein EXD1 isoform X1

UniProtKB/Swiss-Prot

Q6NRD5

UniProtKB/TrEMBL

A0A1L8FB16, A0A974C9Y7
XM_018228836.2 → XP_018084325.1 piRNA biogenesis protein EXD1 isoform X1

UniProtKB/Swiss-Prot

Q6NRD5

UniProtKB/TrEMBL

A0A1L8FB16, A0A974C9Y7