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tspan17.S tetraspanin 17 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 431871, updated on 4-Nov-2024

Summary

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Official Symbol
tspan17.S
Official Full Name
tetraspanin 17 S homeolog
Primary source
Xenbase:XB-GENE-954580
Locus tag
XELAEV_18021361mg
See related
EnsemblRapid:ENSXLAG00005015736 AllianceGenome:Xenbase:XB-GENE-954580
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
tspan17; Tspan-17
Summary
Predicted to be located in membrane. Orthologous to human TSPAN17 (tetraspanin 17). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See tspan17.S in Genome Data Viewer
Location:
chromosome: 3S
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3S NC_054376.1 (99783928..99820724)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3S NC_030729.1 (97919662..97956494)

Chromosome 3S - NC_054376.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 4E Neighboring gene synuclein beta S homeolog Neighboring gene unc-5 netrin receptor A S homeolog Neighboring gene hexokinase 2 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC83687

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
tetraspanin 17 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001091358.1 → NP_001084827.1  tetraspanin 17 S homeolog

    See identical proteins and their annotated locations for NP_001084827.1

    Status: PROVISIONAL

    Source sequence(s)
    BC070723
    UniProtKB/TrEMBL
    A0A974HRL2, Q6NRM4
    Related
    ENSXLAP00005046261.1, ENSXLAT00005047360.1
    Conserved Domains (2) summary
    cd03159
    Location:115 → 235
    TM4SF9_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF9_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
    pfam00335
    Location:16 → 263
    Tetraspannin; Tetraspanin family

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054376.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    99783928..99820724
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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