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mtss1.2.S metastasis suppressor 1, gene 2 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 431867, updated on 4-Nov-2024

Summary

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Official Symbol
mtss1.2.S
Official Full Name
metastasis suppressor 1, gene 2 S homeolog
Primary source
Xenbase:XB-GENE-17335669
Locus tag
XELAEV_18046651mg
See related
EnsemblRapid:ENSXLAG00005029718 AllianceGenome:Xenbase:XB-GENE-17335669
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
MIM; XMIM; mima; mimb; mtss1
Summary
Predicted to enable actin binding activity and phospholipid binding activity. Predicted to act upstream of or within cell projection assembly and plasma membrane organization. Predicted to be located in actin cytoskeleton. Orthologous to human MTSS1 (MTSS I-BAR domain containing 1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See mtss1.2.S in Genome Data Viewer
Location:
chromosome: 9_10S
Exon count:
16
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10S NC_054388.1 (38100641..38164734, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10S NC_030741.1 (31936428..31993232, complement)

Chromosome 9_10S - NC_054388.1Genomic Context describing neighboring genes Neighboring gene TLD domain-containing protein 2-like Neighboring gene gastrula zinc finger protein XlCGF49.1-like Neighboring gene matrix metallopeptidase 24 S homeolog Neighboring gene uncharacterized LOC121398938 Neighboring gene Src-like-adaptor 2 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC83723

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
  
enables phospholipid binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cell projection assembly IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within membrane organization IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within plasma membrane organization IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
protein MTSS 2; uncharacterized protein LOC431867

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054388.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    38100641..38164734 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041578976.1 → XP_041434910.1  protein MTSS 2 isoform X3

    UniProtKB/TrEMBL
    A0A8J1M1N2, Q6NRL3
    Conserved Domains (1) summary
    cl12013
    Location:1 → 191
    BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

  2. XM_041578977.1 → XP_041434911.1  protein MTSS 2 isoform X4

    UniProtKB/TrEMBL
    A0A8J1M0S9, Q6NRL3
    Conserved Domains (1) summary
    cl12013
    Location:1 → 156
    BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

  3. XM_018237407.2 → XP_018092896.1  protein MTSS 2 isoform X1

    UniProtKB/TrEMBL
    A0A8J0TQD5, Q6NRL3
    Related
    ENSXLAP00005088998.1, ENSXLAT00005090666.1

  4. XM_018237408.2 → XP_018092897.1  protein MTSS 2 isoform X2

    UniProtKB/TrEMBL
    A0A1L8EMN0, A0A974BTR9, Q6NRL3
    Related
    ENSXLAP00005088821.1, ENSXLAT00005090490.1

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001091355.1: Suppressed sequence

    Description
    NM_001091355.1: This RefSeq was removed because it is a nonsense-mediated mRNA decay (NMD) candidate.
Nucleotide Protein Strain
Heading Accession and Version

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